wiki:DespoinaLog/2011/01/26

Matrix integrated into Biobank & LL data uploaded in biobank (Data)

  • Clean up labels (trim - spaces , ()*&^&, characters removed)
  • Admin --> Settings added : <plugin name="Settings" type="plugins.system.settings.Settings" />,
    • Set your file directory [path:and path and] saved
  • Upload data

LEFT TODO : xgap_deployname.xml xgap.propperties: inmodel database : handwritten/apps/org/molgenis/xgap/xgap_deployname.xml

Merge LL project  to GCC

  • Trac error Internal Server Error TracError: IOError: zipimport: can not open file /usr/local/lib/python2.6/dist-packages/TracSubTicketsPlugin-0.1.0-py2.6.egg
    o SubTracTicket? :
    • delete python eggs
    • disable in trac common.ini
    • restart apache
  • Update gcc to retrive Joeri's latest version of matrix implementation :
    • after the mapper_implementation = jpa
      • created a fresh workspace with a different gcc version lifelines_workspace
      • error in java.lang.NoClassDefFoundError: Identifiable at java.lang.ClassLoader.defineClass1(Native Method) ...solved
      • null still returned in matrixManager

Update latest version of bbmri@gcc VM7 /BBMRI gcc :

  • the server is tested with a lot of searches (TODO : mail to gcc)
  • change the left menu categories (user management --> inside admin, all form inside one "data views" category)
  • add ontocat logo
  • peregine ?
  • labels changed .
  • BEFORE UPLOAD TO VM7 SERVER :

revisit d2r-server on latest molgenis.n3 :

  • cp ~/Documents/GCC_workspace/gcc/WebContent/WEB-INF/molgenis-rdf-mapping.n3 molgenis-rdf-mapping-latest.n3
  • d2r-server -p 8080 molgenis-rdf-mapping-latest.n3
  • problem with !DataFile_format (E21)

Last modified 13 years ago Last modified on 2011-01-27T10:51:56+01:00