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Table of Contents
Documentation
Welcome to documentation on the MOLGENIS software suite.
Molgenis OMX applications SOPs
- SopMolgenis? - how to check out and build a molgenis app
- Omx manual?
- how to do a molgenis release?
Servers / VMs / Jenkins / Tomcat
- MolgenisServers? - listing of MOLGENIS servers
- How to deploy Tomcat7
- Deploy server in Jenkins
- Create Molgenis VM? - How to request and configure a new copy of 'molgenis gold'
- SopNightlyBuild? - how to create a nightly build
- Mysql setup?
GCC compute cluster
- SOP Users? - How to use the GCC cluster
- SOP New User - Creating a new user account for the GCC infrastructure
- SOP Admins - Configuration details of the GCC cluster
Internal
Legacy SOPs =
- SopUpdateBbmriApp - How to Update Bbmri App
Handy SOPs
LifeLines SOPs
- SopConvertLifeLinesGenoData - how to prepare the geno data from release 3 + imputation (2 sets)
Software
- MOLGENIS framework
- xQTL workbench
MOLGENIS/compute SOPs
- DeployDependencies? - How to deploy tools and resources for your workflows on different backends (Grid, PBS cluster, etc.)