wiki:DroparconDataManagement

Version 1 (modified by Pieter Neerincx, 11 years ago) (diff)

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Data Management

Access

Directory structure a.k.a. what is where

Droparcon data located on the Groningen cluster is stored in /target/gpfs2/gcc/groups/droparcon/. NOTE: When accessing the site via sftp this will be your root folder. Hence you will be chrooted to /target/gpfs2/gcc/groups/droparcon/, which will appear to be your /. We'll refer to /target/gpfs2/gcc/groups/droparcon/ as ${DROPARCON_HOME}.

  • ${DROPARCON_HOME}/home/(your_account)/ Home dirs of individual users.
  • ${DROPARCON_HOME}/rawdata/ Raw data like for example FastQ files.
  • ${DROPARCON_HOME}/projects/ Processed data like ongoing and finished assemblies