Place holder for the MAGE-TAB molgenis
Summary
description: | Import MAGE-TAB files into molgenis |
developers: | a.kanterakis, jvelde |
homepage: | http://magetab-om.sourceforge.net/ |
svn: | http://www.molgenis.org/svn/molgenis-projects/magetab |
state: | production |
Development notes
Parse SDRF
In most SDRF files we have the following adjacent columns:
Hybridization Name | Array Design REF | Term Source REF
According to the specification of magetab:
Measured and derived data files can be associated with a specific hybridization. In each case, either an “Array Design File” or “Array Design REF” column is needed, referencing either an included ADF file or an identifier in a public repository such as ArrayExpress?, respectively. Note that the repository can optionally be indicated using a “Term Source REF” column:
The ArrayDesign? object is defined in magetab_adf.xml but it hasn't any suitable xref field in which the "Term Source REF" should be linked. Is it ok to change the specification file (magetab_adf.xml) or there is something that I am missing?