| | 1 | Place holder for the MAGE-TAB molgenis |
| | 2 | |
| | 3 | == Summary == |
| | 4 | ||description:||Import MAGE-TAB files into molgenis|| |
| | 5 | ||developers:||a.kanterakis, jvelde|| |
| | 6 | ||homepage:||http://magetab-om.sourceforge.net/|| |
| | 7 | ||svn:||http://www.molgenis.org/svn/molgenis-projects/magetab|| |
| | 8 | ||state:||production|| |
| | 9 | |
| | 10 | ---- |
| | 11 | Development notes |
| | 12 | |
| | 13 | ---- |
| | 14 | == Parse SDRF == |
| | 15 | In most SDRF files we have the following adjacent columns: |
| | 16 | |
| | 17 | Hybridization Name | Array Design REF | Term Source REF |
| | 18 | |
| | 19 | According to the specification of magetab: |
| | 20 | |
| | 21 | Measured and derived data files can be associated with a specific hybridization. In each case, either an “Array Design File” or “Array Design REF” column is needed, referencing either an included ADF file or an identifier in a public repository such as ArrayExpress, respectively. Note that the repository can optionally be indicated using a “Term Source REF” column: |
| | 22 | |
| | 23 | The ArrayDesign object is defined in magetab_adf.xml but it hasn't any suitable xref field in which the "Term Source REF" should be linked. Is it ok to change the specification file (magetab_adf.xml) or there is something that I am missing? |
