Changes between Version 1 and Version 2 of MolgenisWorkspaceBasics

Timestamp:

2009-08-22T16:26:29+02:00 (15 years ago)

Author:

Morris Swertz

Comment:

--

MolgenisWorkspaceBasics

@@ -3 +3 @@
 
 == Install the necessary software (only once) ==
-MOLGENIS is known to run happily at Windows, Linux and Mac. We here assume the procedure for the windows installation; for other operating system distributions we refer to respective documentations. To get started, download and install the most recent: 
+MOLGENIS is known to run happily at Windows, Linux and Mac. We here assume the procedure for the windows installation; for other operating system distributions we refer to respective documentations. To get started, download and install the most recent:
 
- 1. Java 6 JDK http://java.sun.com/javase/downloads/ Just install the most recent standard JDK with standard options. 
- 1. Tomcat >=5 web server http://tomcat.apache.org/ Rember the root password you are asked. Don't run Tomcat as a service; we will start and stop it ourself. 
- 1. Mysql >=5.1 database http://dev.mysql.com/downloads/mysql/5.1.html  During installation of the windows version you need to tick 'innodb'. Remember your root password. 
- 1. Eclipse Integrated Development Environment http://www.eclipse.org/downloads/  You need to install the J2EE version (which allows you to start/stop tomcat)
- 1. (Optional) MOLGENIS autogenerates documentation for your application. This requires the GraphViz package from http://www.graphviz.org/Download.php  Make sure your PATH is set to run 'dot.exe' from the commandline. In windows this is set in the control panel -> System -> Environment variables.
- 1. Setup a MySQL database (once per MOLGENIS instance) MOLGENIS typically uses MySQL as data storage back-end although also PostgreSQL may be used. Here the procedure for MySQL is described to create a database and give MOLGENIS permission to populate it. 
- 1. Open mysql.exe as root user.  Under windows in "C:\Program Files\MySQL Server 5.1\bin\mysql.exe - u root -p Type your mysql root password remembered from step 3! 
- 1. Create a database 'molgenis' and provide rights to the molgenis generator to change it using password 'molgenis'. Type: create database molgenis; grant all privileges on molgenis.* to molgenis@localhost identified by 'molgenis';  flush privileges;
+ 1. Java 6 JDK http://java.sun.com/javase/downloads/ [[BR]]Just install the most recent standard JDK with standard options. [[BR]]
+ 1. Tomcat >=5 web server http://tomcat.apache.org/ [[BR]]Rember the root password you are asked. Don't run Tomcat as a service; we will start and stop it ourself. [[BR]]
+ 1. Mysql >=5.1 database http://dev.mysql.com/downloads/mysql/5.1.html  [[BR]]During installation of the windows version you need to tick 'innodb'. Remember your root password. [[BR]]
+ 1. Eclipse Integrated Development Environment http://www.eclipse.org/downloads/  [[BR]]You need to install the J2EE version (which allows you to start/stop tomcat)[[BR]]
+ 1. (Optional) Graphviz[[BR]]MOLGENIS autogenerates documentation for your application. This requires the GraphViz package from http://www.graphviz.org/Download.php  Make sure your PATH is set to run 'dot.exe' from the commandline. In windows this is set in the control panel -> System -> Environment variables.
 
-2.3.        Open the MOLGENIS workspace using Eclipse  Most application developers use Eclipse to develop MOLGENIS applications. Therefore a ready made Eclipse project is the standard MOLGENIS distribution. 8.        Download the latest 'molgenis_workspace.zip' from http://molgenis.sourceforge.net  Just download and unzip. A directory 'molgenisXX_workspace' is created.
+== Create a database in MySQL ==
+Setup a MySQL database (once per MOLGENIS instance) MOLGENIS typically uses MySQL as data storage back-end although also PostgreSQL may be used. Here the procedure for MySQL is described to create a database and give MOLGENIS permission to populate it.
+
+ 1. Open mysql.exe as root user.  Under windows in "C:\Program Files\MySQL Server 5.1\bin\mysql.exe - u root -p [[BR]]Type your mysql root password remembered from step 3 above!
+ 1. Create a database 'molgenis' and give rights to the molgenis generator to change it using password 'molgenis'.[[BR]]Type: create database molgenis; grant all privileges on molgenis.* to molgenis@localhost identified by 'molgenis';  flush privileges;
+
+== Open the MOLGENIS workspace in Eclipse ==
+Many application developers use Eclipse to develop MOLGENIS applications. Therefore a ready made Eclipse project is the standard MOLGENIS distribution. 
+
+ 1. Download the latest 'molgenis_workspace.zip' from http://molgenis.sourceforge.net  Just download and unzip. A directory 'molgenisXX_workspace' is created.