In the Molgenis Research Portal, we want to have a Phenotype Matrix Viewer edit AppCatalogue Create Biobank Catalogue Browse And Select Features Request Data? Approve Request? AppInstaller StoryImputeGenoData StoryConvertGenoData StoryConvertPhenoData Create MOLGENIS VM (LifeLines) Load LifeLines First release (LifeLines) Link VM to WOM AppResearchPortal StoryBrowseAndSelectFeatures?? StoryViewAndFilterInMatrix Download as PLINK Download as SPSS? Run GWAS analysis? Scrum: ticket:1050

Original Requirements on Modules/Matrix

Acceptance criteria:

One viewer! Has options to export to Excel and SPSS. Has column filters that can be stacked. Has row and column header filters. Design decisions:

Repeated values on same measurement will be solved during import In all cases: ask Salome what the researcher would expect to see Suggested solutions: In case of fixed number of values: create new measurements for each repeat (e.g. bp1, bp2, ..) In case of variable number of values: count number + import the last two Status:

We'll use the SliceablePhenoMatrixVM matrix viewer. It supports multiple values. When initializing, you provide it with a hashmap of protocols and lists of measurements. SliceablePhenoMatrixVM implements the Backend interface. There are multiple backends: Relational, EAV and View.