| | 1 | In the Molgenis Research Portal, we want to have a Phenotype Matrix Viewer |
| | 2 | edit |
| | 3 | AppCatalogue |
| | 4 | Create Biobank Catalogue |
| | 5 | Browse And Select Features |
| | 6 | Request Data? |
| | 7 | Approve Request? |
| | 8 | AppInstaller |
| | 9 | StoryImputeGenoData |
| | 10 | StoryConvertGenoData |
| | 11 | StoryConvertPhenoData |
| | 12 | Create MOLGENIS VM |
| | 13 | (LifeLines) Load LifeLines First release |
| | 14 | (LifeLines) Link VM to WOM |
| | 15 | AppResearchPortal |
| | 16 | StoryBrowseAndSelectFeatures? |
| | 17 | StoryViewAndFilterInMatrix |
| | 18 | Download as PLINK |
| | 19 | Download as SPSS? |
| | 20 | Run GWAS analysis? |
| | 21 | Scrum: ticket:1050 |
| | 22 | |
| | 23 | Original Requirements on Modules/Matrix |
| | 24 | |
| | 25 | Acceptance criteria: |
| | 26 | |
| | 27 | One viewer! |
| | 28 | Has options to export to Excel and SPSS. |
| | 29 | Has column filters that can be stacked. |
| | 30 | Has row and column header filters. |
| | 31 | Design decisions: |
| | 32 | |
| | 33 | Repeated values on same measurement will be solved during import |
| | 34 | In all cases: ask Salome what the researcher would expect to see |
| | 35 | Suggested solutions: |
| | 36 | In case of fixed number of values: create new measurements for each repeat (e.g. bp1, bp2, ..) |
| | 37 | In case of variable number of values: count number + import the last two |
| | 38 | Status: |
| | 39 | |
| | 40 | We'll use the SliceablePhenoMatrixVM matrix viewer. |
| | 41 | It supports multiple values. |
| | 42 | When initializing, you provide it with a hashmap of protocols and lists of measurements. |
| | 43 | SliceablePhenoMatrixVM implements the Backend interface. There are multiple backends: Relational, EAV and View. |