Requirements Molgenis application VM's

Software:

• Ant 1.8.2 (​http://ant.apache.org/)
• Subversion 1.7.1 (​http://subversion.apache.org/)
• Java 6.29 (​http://www.java.com/)
• Libcurl 7.23.1 (SUSE @ 7.22.0, ​http://curl.haxx.se/)
• Tomcat 7.0.22 (​http://tomcat.apache.org/)
• HTTP server (​http://httpd.apache.org/)
• R 2.14 (​http://www.r-project.org/)
• MySQL 5.5.17 (​http://www.mysql.com/)
• GNU nano 2.2.6 (​http://www.nano-editor.org/)

Hardware:

• 1GB to 10TB disk space depending on demo or heavy production app
• 4GB to 16GB RAM depending on demo or heavy production app
• 4 to N cores depending on demo or heavy production app

Customizations:

• The default /etc/my.cnf MySQL config file is for "small" DB systems (Server with 128 MB Mem total). This is sub-optimal for all but the smallest DBs we use and makes DBs needlessly slow when we have 4+GB Mem. Would be nice if the VMs will include a patched my.cnf that fits the VMs resources better...

Current state of molgenisgold:

• Ant: 1.8.2 on path
• Subversion: 1.5.7 on path, will test if that is good enough
• Java: 1.6.0 IBM J9 VM on path, probably good
• Libcurl: 7.19.0 installed, probably OK
• Tomcat: tomcat6 installed
• HTTP server: apache2 installed
• R: 2.13 on path
• MySQL: 5.0.67 on path, probably OK
• GNU nano: not installed

How to install RPM

• CheatSheet? ​http://en.opensuse.org/images/1/17/Zypper-cheat-sheet-1.pdf
• Find RPM ​http://rpm.pbone.net/ -> SuSE 11.X

dus: wget [RPM] zypper in [RPM]

Install R:

• ​http://cran.r-project.org/bin/linux/suse/README.html

libcurl install: zypper in libcurl-devel

fortran install (for R/qtl): zipper in gcc*