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Version 1 (modified by trac, 14 years ago) (diff)

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News

Enlighten Your Research Global Award: Virtual Machine Images for Life Science Research

Denver (USA) 18 November 2013 – One of the four prestigious "Enlighten Your Research Global" has been awarded to an idea developed by an ELIXIR working group for the sharing of virtual machines over research and education networks.

  • Posted: 10 years ago (Updated: 10 years ago)
  • Author: george
  • Categories: MCF
  • Comments (0)

MOLGENIS/compute at IWSG-2013

​MOLGENIS/compute was presented at 5th International Workshop on Science Gateways, IWSG 2013, Zurich, Switzerland

Visual Analytics for Bio-Workflows at NBIC-2013

​Towards visual analytics of bio-workflows presentation was given at the NBIC-2013 conference, Lunteren, Netherlands

  • Posted: 11 years ago (Updated: 11 years ago)
  • Author: george
  • Categories: MCF
  • Comments (0)

Visual Analytics for Bio-Workflows at BIOINFORMATICS-2013

"Visualization of bioinformatics workflows for ease of understanding and design activities" paper will be presented at the BIOSTEC-BIOINFORMATICS-2013 conference, on February 11th, 2013, Bercelona, Spain. [​http://www.molgenis.org/raw-attachment/blog ...

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  • Posted: 12 years ago (Updated: 12 years ago)
  • Author: george
  • Categories: MCF
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MOLGENIS/compute workshop at BioAssist meeting

MOLGENIS/compute workshop took place at the NBIC Bio Assist meeting, in Utrect, Oct.12, 2012

  • Posted: 12 years ago (Updated: 12 years ago)
  • Author: george
  • Categories: MCF
  • Comments (0)

Welcome to the Genomics Coordination Centre

The center for genomics databases and analysis tools, courses and workshops. See AboutGcc

Genetical Genomics

  • XgapMolgenis - eXtensible Genotype And Phenotype database for GWL and GWA studies
  • RqtlPackage - R package for the analysis of QTL experiments
  • DesignGg - tool for the experimental design of QTL experiments having multiple factors.
  • GwasPipeline - pipeline for genotype quality control and standard analysis
  • GwasPortal - Research platform for LifeLines genetics research
  • GenomicIslandsAnalysis - Software belonging to the NBIC BRS project "A quantitative account of genomic island acquisitions in prokaryotes"

Sequencing

  • SequencingTools - lists tools and manuals we currently have available for Sequencing.
  • SequencingMolgenis - laboratory information system (LIMS) for Illumina sequencing

Mass Spectrometry

Biobanking

  • [animaldb:WikiStart AnimalDB] - for animal observations
  • PhenotypeMolgenis - file format and database for phenotypic data on human and model organisms
  • LocusSpecificMolgenis - A locus specific database for the Col7a1 gene mutations of which cause dystrophic epidermolysis bullosa
  • GenotypeMolgenis - Genetical information management system (aka GIMS), for the genetics laboratory
  • MicroarrayMolgenis - database for microarray gene expression experiments based on the ​MAGE-TAB standard

Internships

Bachelor- and masterstudents are invited to apply for an internship at the GCC. An overview of suitable projects is available at the GccInternships page.

Intranet

  • GccMeetings - Notes on our weekly work meetings
  • GccTicketList - Lists assigned and open tickets over all GCC tracs
  • GccProjects - Matrix of ongoing projects and their relationships
  • GccManuals - How to use the software and servers that we have
  • GccLinks - Hyperlinks to papers and websites of interest
  • GccTeam - Members of the group
  • GccCalendar - Meetings etc
  • GccGroup - Our mailing list and group discussion site
  • GccServers - How to connect to our servers
  • GccIfolder - How to connect to our iFolder
  • GccLogs - Logbooks of GCC people

BioAssist

Please edit ;-)