Table of Contents
- DataWizard - to import/export XGAP data files(in use)
- MatrixViewer - to view DataElement objects in the form of a matrix …
- RqtlCluster - to run R/QTL calculations on a university computer …
- DataArchiver - to import/export xgap investigations as zip files (in use)
- OntologyBrowser - to browse for ontology terms (in use)
- InvestigationOverview - report of all annotations and data in one …
- MatrixRemove - to remove a whole matrix (in use)
- MatrixRplot - minimal visualisations of data matrices (in use)
- KEGGConverter - to convert identifiers using KEGG orthologs (in use)
XGAP plugins
New tools can be added as 'plugins' to the XGAP UI as described in http://www.molgenis.org/wiki/MolgenisPlugin. This typically involves a statement of the form
<plugin name="MyPlugin" type="java.package.MyPluginCode.java"/>
XGAP already has a growing catalog of such plugins. Below these plugins and their status (use, development, planned) are reported. One can find the code plugins in the folder handwritten/java/plugins of XGAP:
DataWizard - to import/export XGAP data files(in use)
MatrixViewer - to view DataElement objects in the form of a matrix (in use)
RqtlCluster - to run R/QTL calculations on a university computer cluster (in use)
Installation of this plugin requires access to a PBS computing cluster.
DataArchiver - to import/export xgap investigations as zip files (in use)
OntologyBrowser - to browse for ontology terms (in use)
Note: performance is still slow as it is based an remote version of the EBI Ontology Lookup Service
InvestigationOverview - report of all annotations and data in one investigation (in use)
MatrixRemove - to remove a whole matrix (in use)
MatrixRplot - minimal visualisations of data matrices (in use)
KEGGConverter - to convert identifiers using KEGG orthologs (in use)
Last modified 14 years ago
Last modified on 2010-10-01T23:38:13+02:00
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