Clusters and accounts

Get account and sharing data

• RequestAccount? - How to request an account for access to GCC maintained infrastructure (Cloud & HPC clusters)
• DataSharing? - How to up-/download data via SFTP
• TransparentMultiHopSSH? - How to connect via the proxy
• PortForwarding? - How to use port forwarding on Mac to use Filezilla and Komodo Edit

High Performance Computing (HPC) infra

How to compute on the Calculon, Boxy, Zinc-Finger and Leucine-Zipper Clusters.

For Users

• Overview? - Description of the different HPC environments
• Login? - How to start a session.
• Analyses SOP? - How to manage your jobs on the cluster.
• Available resources? - What is available and where.
• Storage SOP? - What is stored where.
• Support? - FAQs, mailinglists, courses and contact info to get in touch with an admin.
• Scheduled Maintenance? - Policy and dates for scheduled maintenance.

For public beta Testers

• Analyses SOP for beta testers? - New Gearshift cluster online!

For Admins

• SOP Accounts? - Managing users and groups for the HPC infrastructure.
• Deploy Apps & Data - SOP for central deployment of software and reference data sets.
• Shared Storage Config? - How are logical file systems related to physical ones.
• Compute Config? - SLURM schedulers, partitions and nodes.

Molgenis and VMs

Cloud VMs / Jenkins / WordPress

• Molgenis Servers? - List of all VMs in our cloud.
• ​Create a new MOLGENIS instance - You can create a new MOLGENIS VM based on CentOS running this Ansible script
• Install SOP / Deploy MOLGENIS via Jenkins - How to deploy MOLGENIS on a VM using Jenkins.
• SOP WordPress - How to manage WordPress websites

Deploy MOLGENIS v2.x server based on PostGreSQL Golden VM

• Deploy a PostGreSQL based MOLGENIS server - How to deploy a MOLGENIS server compatible with MOLGENIS v2.0 and higher

Internal GCC SOPs

• SOP UMCG network - How to connect to UMCG network
• SOP new Employee (employee) - Manual for employee
• SOP New Employee (team) - Manual for team
• GccSopMolgenisRelease - How to create a MOLGENIS release
• GccSopMolgenisBugfixRelease - How to create a MOLGENIS Bugfix-release
• GccSopSystemsGeneticsRelease - How to create a Systems Genetics release
• GccSopMolgenisComputeRelease - How to create a MOLGENIS Compute release