| Version 34 (modified by , 13 years ago) (diff) |
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MOLGENIS moved to github
We are delighted to report that all code of MOLGENIS is now in GitHub?. See http://www.github.com/molgenis. For those not yet up to speed with github we prepared two tutorials: [https://docs.google.com/presentation/d/134WeHhs8bpWNaAO005QoYMLnnPgHCuR ...
xQTL workbench paper published
See http://bioinformatics.oxfordjournals.org/content/28/7/1042. QTL workbench is a scalable web platform for the mapping of quantitative trait loci (QTLs) at multiple levels: for example gene expression (eQTL), protein abundance (pQTL), metabolite ab ...
MOLGENIS at BOSC and ISMB 2010, Boston July 9-13
You can see us at BOSC2010 SIG on Saturday July 10, 14.40 - 15.00 hours, speak to us at posters Q01, E19, E15, P05 on Sunday, July 11: 12.40 - 14.30 and see us at the ISMB technology track, Tuesday, July 13: 12.15 - 12.40.
MOLGENIS and XGAP at BOSC/ISMB
MOLGENIS was at BOSC/DAM meeting and coffee-break demos at the NBIC booth. See BOSC 2009 schedule
xQTL workbench - Manual
New biotechnologies enable exciting QTL experiments that link genetic variation to 'all' gene expression, protein and metabolite traits. Powerful software and hardware are available to analyze these new data but the considerable effort needed to configure pipelines, to scale up processing and to track raw, intermediate and result data are a barrier for most except a small community of experts. Here we report XGAP/cluster: a collaborative effort to bring seamless data management, advanced analytical pipelines and high throughput cluster computing together in one box to biologists workbench. xQTL workbench is created from the modular molgenis_apps software suite.
Try the online xQTL workbench demo
Download xQTL workbench (unzip, run.bat or run.sh to start, or check Download instructions for details)
- Table of Contents
- Introduction
- Biologist
- Bioinformatician
- Administrator
- Tutorial
Attachments (4)
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yeast_geno.txt (66.1 KB) - added by 13 years ago.
Geno_Yeast
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yeast_map.txt (6.5 KB) - added by 13 years ago.
Map Yeast
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yeast_pheno.txt (3.8 MB) - added by 13 years ago.
Yeast Pheno
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yeast_pheno_small.txt (86.9 KB) - added by 13 years ago.
Yeast example phenotypes, 100 probes
Download all attachments as: .zip
