wiki:MolgenisWorkspaceBasics

Version 7 (modified by Morris Swertz, 15 years ago) (diff)

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Documentation

  1. 2012-10-26_EOS26
  2. 5gpm
  3. AboutGcc
  4. Acknowledgements
  5. AddingDataTypes
  6. AddingUserInterfaces
  7. AlexPage
  8. AllAssignedTickets
  9. AllClosedTickets
  10. AllTickets
  11. AndreDeVries
  12. AnimalDBRoadMap
  13. AnimalMolgenis
  14. AnimaldbStart
  15. AppCatalogue
  16. AppInstaller
  17. AppResearchPortal
  18. Apps/Animal
  19. Apps/AnimalDb
  20. Apps/MageTab
  21. Apps/WormQTL
  22. AstroWise
  23. AteNotes
  24. AuthModule
  25. AuthModule/Requirements
  26. AuthModule/RowLevelPermission
  27. AuthModule/TechDesign
  28. AuthModule/UserStories
  29. AuthModuleUserStories
  30. BBMRI
  31. BBMRI_task2
  32. BackLog
  33. BasicFileHandler
  34. BatchesUserStories
  35. Batchesplugin
  36. BinToCsv
  37. BioAssist
  38. BioGrid
  39. BioInformatics
  40. BioMedBridges
  41. BioShare
  42. BiobankCatalog
  43. BiobankingPlatform
  44. BrsProject
  45. BuildPath
  46. Byelas
  47. ByelasCover
  48. ByelasPDEngPoster
  49. CLCdemo27Jan11
  50. CamelCase
  51. CaseSensitivityProblems
  52. CatalogMinutes20120123
  53. CatalogMinutes20120203
  54. CatalogMinutes20120310
  55. Catalogue
  56. ChangeLog
  57. CheckoutMolgenisWorkspace
  58. CilairDB
  59. CilairMolgenis
  60. ClusterJobs
  61. ClusterPlugin
  62. CodeConventions
  63. ComparativeGenomicsProject
  64. ComparativeProject
  65. ComputationResource
  66. ComputeRoadmap
  67. ComputeStart
  68. ComputeStartArchitecture
  69. ComputeStartDataModel
  70. ComputeStartDefault
  71. ComputeStartExample1
  72. ComputeStartExample2
  73. ComputeStartExample3
  74. ComputeStartExample4
  75. ComputeStartExample6
  76. ComputeStartExample7
  77. ComputeStartExamples
  78. ComputeStartOnline
  79. ComputeStartSetup
  80. ComputeVM
  81. ConnectToXeroxPrintersForMac
  82. Contact
  83. Courses
  84. Courses/BASH
  85. Courses/ComputationalMolecularBiologyResearch2015
  86. Courses/ComputationalMolecularBiologyResearch2015/P1
  87. Courses/ComputationalMolecularBiologyResearch2015/P6
  88. Courses/ComputationalMolecularBiologyResearch2015/P7
  89. Courses/ComputationalMolecularBiologyResearch2015/P8
  90. Courses/ComputationalMolecularBiologyResearch2015/P9
  91. Courses/ComputationalMolecularBiologyResearch2016
  92. Courses/ComputationalMolecularBiologyResearch2016/P1
  93. Courses/ComputationalMolecularBiologyResearch2016/P2
  94. Courses/ComputationalMolecularBiologyResearch2016/P3
  95. Courses/ComputationalMolecularBiologyResearch2016/P4
  96. Courses/ComputationalMolecularBiologyResearch2016/P5
  97. Courses/ComputationalMolecularBiologyResearch2016/P6
  98. Courses/DataIntegration
  99. CsvToBin
  100. CurrentlyScheduledTickets
  101. CytoScape
  102. DAS
  103. DJWS
  104. DataAnalysisFramework
  105. DataArchiver
  106. DataConversionSchema
  107. DataMatrix
  108. DataSets
  109. DataWizard
  110. DatabasePermissions
  111. DesignGg
  112. DespoinaLog
  113. DespoinaLog/2010/02/08
  114. DespoinaLog/2010/02/10
  115. DespoinaLog/2010/02/15
  116. DespoinaLog/2010/02/16
  117. DespoinaLog/2010/02/17
  118. DespoinaLog/2010/02/19
  119. DespoinaLog/2010/03/04
  120. DespoinaLog/2010/03/05
  121. DespoinaLog/2010/03/08
  122. DespoinaLog/2010/03/09
  123. DespoinaLog/2010/03/10
  124. DespoinaLog/2010/03/11
  125. DespoinaLog/2010/03/12
  126. DespoinaLog/2010/03/13
  127. DespoinaLog/2010/03/14
  128. DespoinaLog/2010/03/15
  129. DespoinaLog/2010/03/16
  130. DespoinaLog/2010/03/17
  131. DespoinaLog/2010/03/18
  132. DespoinaLog/2010/03/19
  133. DespoinaLog/2010/03/20
  134. DespoinaLog/2010/03/22
  135. DespoinaLog/2010/03/23
  136. DespoinaLog/2010/03/24
  137. DespoinaLog/2010/03/25
  138. DespoinaLog/2010/03/26
  139. DespoinaLog/2010/03/30
  140. DespoinaLog/2010/03/31
  141. DespoinaLog/2010/04/07
  142. DespoinaLog/2010/04/08
  143. DespoinaLog/2010/04/09
  144. DespoinaLog/2010/04/12
  145. DespoinaLog/2010/04/13
  146. DespoinaLog/2010/04/14
  147. DespoinaLog/2010/04/15
  148. DespoinaLog/2010/04/16
  149. DespoinaLog/2010/04/19
  150. DespoinaLog/2010/04/20
  151. DespoinaLog/2010/04/21
  152. DespoinaLog/2010/04/22
  153. DespoinaLog/2010/04/23
  154. DespoinaLog/2010/04/26
  155. DespoinaLog/2010/04/27
  156. DespoinaLog/2010/04/28
  157. DespoinaLog/2010/04/29
  158. DespoinaLog/2010/05/03
  159. DespoinaLog/2010/05/04
  160. DespoinaLog/2010/05/06
  161. DespoinaLog/2010/05/07
  162. DespoinaLog/2010/05/10
  163. DespoinaLog/2010/05/11
  164. DespoinaLog/2010/05/12
  165. DespoinaLog/2010/05/17
  166. DespoinaLog/2010/05/18
  167. DespoinaLog/2010/05/19
  168. DespoinaLog/2010/05/20
  169. DespoinaLog/2010/05/21
  170. DespoinaLog/2010/05/25
  171. DespoinaLog/2010/05/26
  172. DespoinaLog/2010/05/27
  173. DespoinaLog/2010/05/28
  174. DespoinaLog/2010/05/31
  175. DespoinaLog/2010/06/01
  176. DespoinaLog/2010/06/02
  177. DespoinaLog/2010/06/03
  178. DespoinaLog/2010/06/04
  179. DespoinaLog/2010/06/07
  180. DespoinaLog/2010/06/08
  181. DespoinaLog/2010/06/09
  182. DespoinaLog/2010/06/10
  183. DespoinaLog/2010/06/11
  184. DespoinaLog/2010/06/14
  185. DespoinaLog/2010/06/15
  186. DespoinaLog/2010/06/16
  187. DespoinaLog/2010/06/17
  188. DespoinaLog/2010/06/18
  189. DespoinaLog/2010/06/20
  190. DespoinaLog/2010/06/21
  191. DespoinaLog/2010/06/23
  192. DespoinaLog/2010/06/24
  193. DespoinaLog/2010/06/25
  194. DespoinaLog/2010/06/28
  195. DespoinaLog/2010/06/29
  196. DespoinaLog/2010/06/30
  197. DespoinaLog/2010/07/01
  198. DespoinaLog/2010/07/07
  199. DespoinaLog/2010/09/02
  200. DespoinaLog/2010/09/05
  201. DespoinaLog/2010/09/06
  202. DespoinaLog/2010/09/07
  203. DespoinaLog/2010/09/08
  204. DespoinaLog/2010/09/09
  205. DespoinaLog/2010/09/10
  206. DespoinaLog/2010/09/13
  207. DespoinaLog/2010/09/14
  208. DespoinaLog/2010/09/15
  209. DespoinaLog/2010/09/16
  210. DespoinaLog/2010/09/17
  211. DespoinaLog/2010/09/17+
  212. DespoinaLog/2010/09/20
  213. DespoinaLog/2010/09/21
  214. DespoinaLog/2010/09/22
  215. DespoinaLog/2010/09/23
  216. DespoinaLog/2010/09/24
  217. DespoinaLog/2010/09/28
  218. DespoinaLog/2010/09/29
  219. DespoinaLog/2010/09/30
  220. DespoinaLog/2010/10/1
  221. DespoinaLog/2010/10/11
  222. DespoinaLog/2010/10/14
  223. DespoinaLog/2010/10/15
  224. DespoinaLog/2010/10/18
  225. DespoinaLog/2010/10/19
  226. DespoinaLog/2010/10/20
  227. DespoinaLog/2010/10/21
  228. DespoinaLog/2010/10/22
  229. DespoinaLog/2010/10/25
  230. DespoinaLog/2010/10/26
  231. DespoinaLog/2010/10/27
  232. DespoinaLog/2010/10/28
  233. DespoinaLog/2010/10/29
  234. DespoinaLog/2010/10/4
  235. DespoinaLog/2010/10/5
  236. DespoinaLog/2010/10/6
  237. DespoinaLog/2010/10/7
  238. DespoinaLog/2010/10/8
  239. DespoinaLog/2010/11/01
  240. DespoinaLog/2010/11/04
  241. DespoinaLog/2010/11/05
  242. DespoinaLog/2010/11/08
  243. DespoinaLog/2010/11/09
  244. DespoinaLog/2010/11/10
  245. DespoinaLog/2010/11/11
  246. DespoinaLog/2010/11/12
  247. DespoinaLog/2010/11/15
  248. DespoinaLog/2010/11/16
  249. DespoinaLog/2010/11/17
  250. DespoinaLog/2010/11/22
  251. DespoinaLog/2010/11/23
  252. DespoinaLog/2010/11/24
  253. DespoinaLog/2010/11/25
  254. DespoinaLog/2010/11/26
  255. DespoinaLog/2010/11/30
  256. DespoinaLog/2010/12/01
  257. DespoinaLog/2010/12/02
  258. DespoinaLog/2010/12/03
  259. DespoinaLog/2010/12/06
  260. DespoinaLog/2010/12/07
  261. DespoinaLog/2010/12/08
  262. DespoinaLog/2010/12/09
  263. DespoinaLog/2010/12/10
  264. DespoinaLog/2010/12/13
  265. DespoinaLog/2010/12/14
  266. DespoinaLog/2010/12/15
  267. DespoinaLog/2010/12/16
  268. DespoinaLog/2010/12/20
  269. DespoinaLog/2010/12/21
  270. DespoinaLog/2011/01/10
  271. DespoinaLog/2011/01/12
  272. DespoinaLog/2011/01/13
  273. DespoinaLog/2011/01/14
  274. DespoinaLog/2011/01/17
  275. DespoinaLog/2011/01/18
  276. DespoinaLog/2011/01/20
  277. DespoinaLog/2011/01/24
  278. DespoinaLog/2011/01/25
  279. DespoinaLog/2011/01/26
  280. DespoinaLog/2011/01/27
  281. DespoinaLog/2011/02/02
  282. DespoinaLog/2011/02/03
  283. DespoinaLog/2011/02/04
  284. DespoinaLog/2011/02/06
  285. DespoinaLog/2011/02/07
  286. DespoinaLog/2011/02/09
  287. DespoinaLog/2011/02/10
  288. DespoinaLog/2011/02/11
  289. DespoinaLog/2011/02/14
  290. DespoinaLog/2011/02/15
  291. DespoinaLog/2011/02/21
  292. DespoinaLog/2011/02/22
  293. DespoinaLog/2011/02/23
  294. DespoinaLog/2011/02/28
  295. DespoinaLog/2011/03/01
  296. DespoinaLog/2011/03/02
  297. DespoinaLog/2011/03/04
  298. DespoinaLog/2011/03/07
  299. DespoinaLog/2011/03/08
  300. DespoinaLog/2011/03/09
  301. DespoinaLog/2011/03/10
  302. DespoinaLog/2011/03/11
  303. DespoinaLog/2011/03/14
  304. DespoinaLog/2011/03/22
  305. DespoinaLog/2011/03/29
  306. DespoinaLog/2011/03/30
  307. DespoinaLog/2011/03/31
  308. DespoinaLog/2011/04/05
  309. DespoinaLog/2011/04/07
  310. DespoinaLog/2011/04/12
  311. DespoinaLog/2011/04/13
  312. DespoinaLog/2011/05/03
  313. DespoinaLog/2011/06/20
  314. DespoinaLog/2011/06/23
  315. DespoinaLog/2011/07/29
  316. DespoinaLog/2011/09/23
  317. DespoinaLog/2011/09/26
  318. DespoinaLog/2011/10/18
  319. DespoinaLog/2011/11/25
  320. DespoinaLog/2011/12/01
  321. DespoinaLog/2011/12/09
  322. DespoinaLog/2012/02/03
  323. DespoinaLog/2012/02/07
  324. DespoinaLog/2012/02/08
  325. DespoinaLog/2012/02/13
  326. DespoinaLog/2012/02/14
  327. DespoinaLog/2012/02/17
  328. DespoinaLog/2012/02/24
  329. DespoinaLog/2012/02/27
  330. DespoinaLog/2012/03/01
  331. DespoinaLog/2012/03/05
  332. DespoinaLog/2012/03/16
  333. DespoinaLog/2012/03/21
  334. DespoinaLog/2012/04/18
  335. DespoinaLog/2012/04/19
  336. DespoinaLog/2012/05/09
  337. DespoinaLog/2012/05/10
  338. DespoinaLog/2012/05/11
  339. DespoinaLog/2012/05/14
  340. DespoinaLog/2012/05/15
  341. DespoinaLog/2012/05/16
  342. DespoinaLog/2012/05/18
  343. DespoinaLog/2012/05/29
  344. DespoinaLog/2012/06/07
  345. DespoinaLog/2012/06/12
  346. DespoinaLog/2012/06/14
  347. DespoinaLog/2012/06/19
  348. DespoinaLog/2012/08/22
  349. DespoinaLog/2012/10/05
  350. DespoinaLog/2012/10/08
  351. DespoinaLog/2013/23/05
  352. DespoinaLog/test_graphviz
  353. DespoinaLog_BBMRI_USECASES
  354. DespoinaLog_Index_search
  355. DespoinaLog_LL_Catalogue_use_cases
  356. DespoinaLog_molgenis14
  357. DespoinaLog_molgenis35Tomolgenis14
  358. DespoinaLog_peregrine
  359. DespoinaLog_update
  360. DevTeamTwoWeeks
  361. DiagnosticsMolgenis
  362. DocBookTest
  363. Documentation
  364. DroparconDataManagement
  365. DroparconStart
  366. EnsemblTestDataSource
  367. ExampleUseCase
  368. FAQ
  369. FrontController
  370. GBrowse
  371. GCCCluster
  372. GCCSopConvertIBDStageData
  373. GCCSopNewEmployee
  374. GCCSopNewEmployeeGCC
  375. GCCSopUMCGNetwork
  376. GCCluster
  377. GccStart
  378. GeneNetwork
  379. GenomicIslandsAnalysis
  380. GenotypeMolgenis
  381. GenotypePipeline
  382. GidsUserStories
  383. GonlDownload
  384. GonlStart
  385. GonlTemplate
  386. GroupMeetings
  387. GroupMeetings/2010_01_11
  388. GuiPatterns
  389. GwasPipeline
  390. GwasPortal
  391. HPC
  392. HPC_deploy
  393. HPC_v1
  394. HowtoScreen
  395. INTRANET/LinuxHowto
  396. ImportExport
  397. IndexBasedSearch
  398. Installation
  399. IntellijTips
  400. InterMapTxt
  401. InterTrac
  402. InterWiki
  403. Internships
  404. IntraNet
  405. IntraNet/LinuxHowto
  406. IntraNet/Meetings
  407. Intranet/SequenceAnnotationPipeline
  408. JavaScript
  409. JessicaLog
  410. JessicaLog/2010-09-10
  411. JessicaLog/2010-09-17
  412. JessicaLog/2010-09-24
  413. JessicaLog/2010-10-01
  414. JessicaLog/2010-10-08
  415. JessicaLog/2010-10-15
  416. JessicaLog/2011-01-13
  417. JorisLog
  418. JorisLog/2010/12/06
  419. JorisLog/2010/12/07
  420. JorisLog/2010/12/08
  421. JorisLog/2010/Week49
  422. JorisLog/2010/Week50
  423. JorisLog/49
  424. LIMS_Information
  425. LifeLines
  426. LifeLinesMeetings
  427. LifeLinesMeetings/2010_02_09
  428. LifeLinesStories
  429. LifeWise
  430. LocusSpecificMolgenis
  431. LuceneIndexBasedSearchManual
  432. MageTabProject
  433. MailingList
  434. MainNav
  435. MappingDecorator
  436. MassPeak
  437. MatrixModule
  438. MatrixPlugin
  439. MergingGenotypeData
  440. MetaNetwork
  441. MicroarrayMolgenis
  442. MinutesWeeklyDevMeetings
  443. Mockups
  444. Module/MatrixViewer
  445. Modules
  446. Modules/AnimalDb
  447. Modules/ApplyProtocol
  448. Modules/Auth
  449. Modules/AuthModule/WishList
  450. Modules/Batches
  451. Modules/Compute
  452. Modules/Compute/UsingRscripts
  453. Modules/GenomeBrowser
  454. Modules/ImportWizard
  455. Modules/Matrix
  456. Modules/MatrixViewer
  457. Modules/MolgenisSettings
  458. Modules/QTLFinder
  459. Modules/StudyBook
  460. Modules/TableView
  461. ModulesOld
  462. MolApp
  463. MolenisBug
  464. Molgenis-connect
  465. MolgenisAddressBookExample
  466. MolgenisAppStories
  467. MolgenisApps
  468. MolgenisApps/Architecture
  469. MolgenisAppsStories
  470. MolgenisAsGalaxyDatasource
  471. MolgenisBookShelf
  472. MolgenisBookShelve
  473. MolgenisCommandLine
  474. MolgenisComponents
  475. MolgenisCore
  476. MolgenisDataModel
  477. MolgenisDeployUnderOtherName
  478. MolgenisDownload
  479. MolgenisDownloads
  480. MolgenisDtd
  481. MolgenisEmail
  482. MolgenisEnhancements
  483. MolgenisFaq
  484. MolgenisFile
  485. MolgenisFileHandler
  486. MolgenisFolderLayout
  487. MolgenisFromExisting
  488. MolgenisGeneratorBasics
  489. MolgenisGoogleGroup
  490. MolgenisGuide
  491. MolgenisGuideOnePage
  492. MolgenisIndex
  493. MolgenisInternship
  494. MolgenisLanguageReference
  495. MolgenisLanguageReferenceOnePage
  496. MolgenisModules
  497. MolgenisMovies
  498. MolgenisMovies/DemoMovie
  499. MolgenisOnEclipse
  500. MolgenisOnEclipseHelios
  501. MolgenisOnEclipseIndigo
  502. MolgenisOnWindows
  503. MolgenisPluginFramework
  504. MolgenisPlugins
  505. MolgenisPolls
  506. MolgenisPractice
  507. MolgenisProcessing
  508. MolgenisProgress2010_1
  509. MolgenisProject
  510. MolgenisProjects
  511. MolgenisScrum
  512. MolgenisScrum/Backlog
  513. MolgenisScrum/Demo11.27
  514. MolgenisScrum/LifeLinesStories
  515. MolgenisScrum/Sprint11.06
  516. MolgenisScrum/Sprint11.09
  517. MolgenisScrum/Sprint11.12
  518. MolgenisScrum/Sprint11.16
  519. MolgenisScrum/Sprint11.20
  520. MolgenisScrum/Sprint11.24
  521. MolgenisServersFaq
  522. MolgenisServlet
  523. MolgenisSourceCode
  524. MolgenisStart
  525. MolgenisSystemList
  526. MolgenisTesting
  527. MolgenisTicketAttachments/Animal
  528. MolgenisTicketAttachments/BBMRI
  529. MolgenisTicketAttachments/Compute
  530. MolgenisTicketAttachments/GCC
  531. MolgenisTicketAttachments/MAGE
  532. MolgenisTicketAttachments/MOLGENIS
  533. MolgenisTicketAttachments/OntoCat
  534. MolgenisTicketAttachments/Pheno
  535. MolgenisTicketAttachments/XGAP
  536. MolgenisTicketFaq
  537. MolgenisUiComponents
  538. MolgenisWorkspaceBasics
  539. MoveDatabaseToOtherPartition
  540. MsStart
  541. MySqlManual
  542. MydasServerConfig
  543. MzMatch
  544. NGS
  545. NgsWorkbench
  546. NpcProject
  547. ObservMeetings
  548. ObservMeetings/2012_04_03
  549. ObservMeetings/OmicsConnect
  550. ObservStart
  551. ObservStart/OmicsConnect
  552. OntoCAT
  553. OntoCat
  554. OntocatDownload
  555. OntocatGuide
  556. OntocatInstallation
  557. OntocatStart
  558. PageTemplates
  559. PathoKB
  560. PeakML
  561. PepchipMolgenis
  562. PhenoFlow
  563. PhenoWorkgroup
  564. PhenotypeMolgenis
  565. PipelineMolgenis
  566. PostGreSQLBasedServerDeploy
  567. ProjectPeople
  568. RESTful_architecture
  569. Reasoning
  570. RecentChanges
  571. RecentlyClosedTickets
  572. RichWizardModule
  573. Roadmap
  574. RobotsTxt
  575. Route
  576. RprojectInterface
  577. RqtlIntegration
  578. RqtlPackage
  579. SORTA
  580. SandBox
  581. SearchModule
  582. SemanticLayer
  583. SequencingMolgenis
  584. SequencingTools
  585. SequencingWiki
  586. ShowAndTellProposals
  587. SopConvertLifeLinesGenoData
  588. SopDowngradeJavaVersion
  589. SopNewUser
  590. SopPrintScrum
  591. SopUpdateBbmriApp
  592. SopUseGenericImporter
  593. SopUseJQuerytree
  594. StoryBrowseCatalogAndSelectFeatures
  595. StoryConvertGenoData
  596. StoryConvertPhenoData
  597. StoryCreateBiobankCatalog
  598. StoryDownloadAsPlink
  599. StoryImputeGenoData
  600. StoryLifeLinesFirstRelease
  601. StoryLinkWomToVm
  602. StoryNewMolgenisVm
  603. StoryViewAndFilterInMatrix
  604. StudentProjects
  605. SystemsGenetics
  606. TarGet
  607. TavernaInterface
  608. Team1
  609. Team2
  610. TeamMembers
  611. TemplateModulePage
  612. TermsAndConditions
  613. Test
  614. TestLinkNew
  615. TestPage
  616. TestProtocol
  617. TicketQuery
  618. TicketStats
  619. TitleIndex
  620. TracAccessibility
  621. TracAdmin
  622. TracBackup
  623. TracBatchModify
  624. TracBrowser
  625. TracCgi
  626. TracChangeLog
  627. TracChangeset
  628. TracEnvironment
  629. TracFastCgi
  630. TracFineGrainedPermissions
  631. TracGuide
  632. TracHackExamples
  633. TracImport
  634. TracIni
  635. TracInstall
  636. TracInterfaceCustomization
  637. TracLinks
  638. TracLogging
  639. TracModPython
  640. TracModWSGI
  641. TracNavigation
  642. TracNotification
  643. TracPermissions
  644. TracPlugins
  645. TracQuery
  646. TracReports
  647. TracRepositoryAdmin
  648. TracRevisionLog
  649. TracRoadmap
  650. TracRss
  651. TracSearch
  652. TracStandalone
  653. TracSupport
  654. TracSyntaxColoring
  655. TracTickets
  656. TracTicketsCustomFields
  657. TracTimeline
  658. TracTodoList
  659. TracUnicode
  660. TracUpgrade
  661. TracWiki
  662. TracWorkflow
  663. TransparentMultiHopSSHNewLobby
  664. Tutorial
  665. Tutorial/FAQ
  666. Tutorial/Molgenis_Basics
  667. Tutorial/Setup_MySQL_database
  668. Tutorial/Setup_Tomcat_server
  669. Tutorial/Setup_test_molgenis
  670. TwitterBox
  671. UseCasesAte002Impl01
  672. UserInterface
  673. UserManagerPluginPictures
  674. VCFAggregateScriptManual
  675. VMRequirements
  676. WebContent
  677. WikiDeletePage
  678. WikiFormatting
  679. WikiHtml
  680. WikiMacros
  681. WikiNewPage
  682. WikiPageNames
  683. WikiProcessors
  684. WikiRestructuredText
  685. WikiRestructuredTextLinks
  686. WikiStart
  687. WikiStartOld
  688. WikiTipsAndTricks
  689. WormBase
  690. XGAPWorkgroup
  691. XQtlGuide
  692. Xgap
  693. XgapCollaboration
  694. XgapContributors
  695. XgapCustomization
  696. XgapDataModel
  697. XgapDevelopment
  698. XgapDownload
  699. XgapEnhancements
  700. XgapEnhancements/MatrixInterface
  701. XgapExchange
  702. XgapFormatReference
  703. XgapFormatTutorial
  704. XgapInstall
  705. XgapMolgenis
  706. XgapObjectModel
  707. XgapOverview
  708. XgapPluginsAvailable
  709. XgapProject
  710. XgapSourceCode
  711. XgapStart
  712. XgapUpdateDatabase
  713. adbPrivate/ArchiveIndex
  714. addAUTH
  715. bbmri_subtask3
  716. bbmri_task1
  717. datasets
  718. diagnostic
  719. eBiobank
  720. generateArtificialGwas
  721. genomics
  722. github_molgenis
  723. intranet
  724. ngslimsroadmap
  725. r
  726. research
  727. xQTL
  728. xQTLAdministratorDatabase
  729. xQTLAdministratorDownload
  730. xQTLAdministratorInstall
  731. xQTLAdministratorJobs
  732. xQTLAdministratorPermissions
  733. xQTLAppUserStories
  734. xQTLBioinformaticianAnalysis
  735. xQTLBioinformaticianGalaxy
  736. xQTLBioinformaticianRCheatSheet
  737. xQTLBioinformaticianReview
  738. xQTLBioinformaticianScript
  739. xQTLBioinformaticianTag
  740. xQTLBiologistBrowse
  741. xQTLBiologistImport
  742. xQTLBiologistLogin
  743. xQTLBiologistRun
  744. xQTLIntroduction
  745. xQTLTutorialBiologistBrowsingResults
  746. xQTLTutorialBiologistInspectingData
  747. xQTLTutorialBiologistRunningAnalysis
  748. xQTLTutorialBiologistUploadingData
  749. xQTLTutorialRqtl
  750. xQTLTutorialStart
  751. xQTLUserReview
  752. xgap
  753. xgap/Introduction
  754. xqtl

Getting Started

This section explains what you need to get started from a clean OS install up to the point where you can generate, run and browse the MOLGENIS example that is shipped with the MOLGENIS distribution (in the next chapter).

Install the necessary software (only once)

MOLGENIS is known to run happily at Windows, Linux and Mac. We here assume the procedure for the windows installation; for other operating system distributions we refer to respective documentations. To get started, download and install the most recent:

  1. Java 6 JDK http://java.sun.com/javase/downloads/
    Just install the most recent standard JDK with standard options.
  2. Tomcat >=5 web server http://tomcat.apache.org/
    Rember the root password you are asked. Don't run Tomcat as a service; we will start and stop it ourself.
  3. Mysql >=5.1 database http://dev.mysql.com/downloads/mysql/5.1.html
    During installation of the windows version you need to tick 'innodb'. Remember your root password.
  4. Eclipse Integrated Development Environment http://www.eclipse.org/downloads/
    You need to install the J2EE version (which allows you to start/stop tomcat)
  5. (Optional) Graphviz
    MOLGENIS autogenerates documentation for your application. This requires the GraphViz? package from http://www.graphviz.org/Download.php Make sure your PATH is set to run 'dot.exe' from the commandline. In windows this is set in the control panel -> System -> Environment variables.

Create a database in MySQL

Setup a MySQL database (once per MOLGENIS instance) MOLGENIS typically uses MySQL as data storage back-end although also PostgreSQL may be used. Here the procedure for MySQL is described to create a database and give MOLGENIS permission to populate it.

  1. Open mysql.exe as root user. Under windows in "C:\Program Files\MySQL Server 5.1\bin\mysql.exe - u root -p
    Type your mysql root password remembered from step 3 above!
  2. Create a database 'molgenis' and give rights to the molgenis generator to change it using password 'molgenis'.
    Type: create database molgenis; grant all privileges on molgenis.* to molgenis@localhost identified by 'molgenis'; flush privileges;

Open the MOLGENIS workspace in Eclipse

Many application developers use Eclipse to develop MOLGENIS applications. Therefore a ready made Eclipse project is the standard MOLGENIS distribution.

  1. Download the latest 'molgenis_workspace.zip' from http://molgenis.sourceforge.net Just download and unzip. A directory 'molgenisXX_workspace' is created.

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